PolyDataContourToImageData

#include <vtkCutter.h>
#include <vtkImageData.h>
#include <vtkImageStencil.h>
#include <vtkLinearExtrusionFilter.h>
#include <vtkMetaImageWriter.h>
#include <vtkNew.h>
#include <vtkPlane.h>
#include <vtkPointData.h>
#include <vtkPolyData.h>
#include <vtkPolyDataToImageStencil.h>
#include <vtkSphereSource.h>
#include <vtkStripper.h>
#include <vtkXMLPolyDataWriter.h>

// This example generates a sphere, cuts it with a plane and, therefore,
// generates a circlular contour (vtkPolyData). Subsequently a binary
// image representation (vtkImageData) is extracted from it. Internally
// vtkPolyDataToImageStencil and vtkLinearExtrusionFilter are
// utilized. Both the circular poly data (circle.vtp) and the resultant
// image (labelImage.mhd) are saved to disk.

int main(int, char*[])
{
  // 3D source sphere
  vtkNew<vtkSphereSource> sphereSource;
  sphereSource->SetPhiResolution(30);
  sphereSource->SetThetaResolution(30);
  sphereSource->SetCenter(40, 40, 0);
  sphereSource->SetRadius(20);

  // generate circle by cutting the sphere with an implicit plane
  // (through its center, axis-aligned)
  vtkNew<vtkCutter> circleCutter;
  circleCutter->SetInputConnection(sphereSource->GetOutputPort());
  vtkNew<vtkPlane> cutPlane;
  cutPlane->SetOrigin(sphereSource->GetCenter());
  cutPlane->SetNormal(0, 0, 1);
  circleCutter->SetCutFunction(cutPlane);

  vtkNew<vtkStripper> stripper;
  stripper->SetInputConnection(circleCutter->GetOutputPort()); // valid circle
  stripper->Update();

  // that's our circle
  auto circle = stripper->GetOutput();

  // write circle out
  vtkNew<vtkXMLPolyDataWriter> polyDataWriter;
  polyDataWriter->SetInputData(circle);
  polyDataWriter->SetFileName("circle.vtp");
  polyDataWriter->SetCompressorTypeToNone();
  polyDataWriter->SetDataModeToAscii();
  polyDataWriter->Write();

  // prepare the binary image's voxel grid
  vtkNew<vtkImageData> whiteImage;
  double bounds[6];
  circle->GetBounds(bounds);
  double spacing[3]; // desired volume spacing
  spacing[0] = 0.5;
  spacing[1] = 0.5;
  spacing[2] = 0.5;
  whiteImage->SetSpacing(spacing);

  // compute dimensions
  int dim[3];
  for (int i = 0; i < 3; i++)
  {
    dim[i] = static_cast<int>(
                 ceil((bounds[i * 2 + 1] - bounds[i * 2]) / spacing[i])) +
        1;
    if (dim[i] < 1)
      dim[i] = 1;
  }
  whiteImage->SetDimensions(dim);
  whiteImage->SetExtent(0, dim[0] - 1, 0, dim[1] - 1, 0, dim[2] - 1);
  double origin[3];

  // NOTE: I am not sure whether or not we had to add some offset!
  origin[0] = bounds[0]; // + spacing[0] / 2;
  origin[1] = bounds[2]; // + spacing[1] / 2;
  origin[2] = bounds[4]; // + spacing[2] / 2;
  whiteImage->SetOrigin(origin);
  whiteImage->AllocateScalars(VTK_UNSIGNED_CHAR, 1);

  // fill the image with foreground voxels:
  unsigned char inval = 255;
  unsigned char outval = 0;
  vtkIdType count = whiteImage->GetNumberOfPoints();
  for (vtkIdType i = 0; i < count; ++i)
  {
    whiteImage->GetPointData()->GetScalars()->SetTuple1(i, inval);
  }

  // sweep polygonal data (this is the important thing with contours!)
  vtkNew<vtkLinearExtrusionFilter> extruder;
  extruder->SetInputData(circle);
  extruder->SetScaleFactor(1.);
  extruder->SetExtrusionTypeToVectorExtrusion();
  extruder->SetVector(0, 0, 1);
  extruder->Update();

  // polygonal data --> image stencil:
  vtkNew<vtkPolyDataToImageStencil> pol2stenc;
  pol2stenc->SetTolerance(0); // important if extruder->SetVector(0, 0, 1) !!!
  pol2stenc->SetInputConnection(extruder->GetOutputPort());
  pol2stenc->SetOutputOrigin(origin);
  pol2stenc->SetOutputSpacing(spacing);
  pol2stenc->SetOutputWholeExtent(whiteImage->GetExtent());
  pol2stenc->Update();

  // cut the corresponding white image and set the background:
  vtkNew<vtkImageStencil> imgstenc;
  imgstenc->SetInputData(whiteImage);
  imgstenc->SetStencilConnection(pol2stenc->GetOutputPort());
  imgstenc->ReverseStencilOff();
  imgstenc->SetBackgroundValue(outval);
  imgstenc->Update();
  imgstenc->GetOutput()->Print(std::cout);

  vtkNew<vtkMetaImageWriter> imageWriter;
  imageWriter->SetFileName("labelImage.mhd");
  imageWriter->SetInputConnection(imgstenc->GetOutputPort());
  imageWriter->Write();

  return EXIT_SUCCESS;
}

cmake_minimum_required(VERSION 3.12 FATAL_ERROR)

project(PolyDataContourToImageData)

find_package(VTK COMPONENTS 
  CommonCore
  CommonDataModel
  FiltersCore
  FiltersModeling
  FiltersSources
  IOImage
  IOXML
  ImagingStencil
)

if (NOT VTK_FOUND)
  message(FATAL_ERROR "PolyDataContourToImageData: Unable to find the VTK build folder.")
endif()

# Prevent a "command line is too long" failure in Windows.
set(CMAKE_NINJA_FORCE_RESPONSE_FILE "ON" CACHE BOOL "Force Ninja to use response files.")
add_executable(PolyDataContourToImageData MACOSX_BUNDLE PolyDataContourToImageData.cxx )
  target_link_libraries(PolyDataContourToImageData PRIVATE ${VTK_LIBRARIES}
)
# vtk_module_autoinit is needed
vtk_module_autoinit(
  TARGETS PolyDataContourToImageData
  MODULES ${VTK_LIBRARIES}
)

cd PolyDataContourToImageData/build

cmake ..

cmake -DVTK_DIR:PATH=/home/me/vtk_build ..

make

./PolyDataContourToImageData